A shotgun metagenomic analysis of the fecal microbiome in humans ... - Parasites & Vectors
Adam RD. Biology of Giardia lamblia. Clin Microbiol Rev. 2001;14:447–75.
Solaymani-Mohammadi S, Singer SM. Giardia duodenalis: the double-edged sword of immune responses in giardiasis. Exp Parasitol. 2010;126:292–7.
Solaymani-Mohammadi S. Mucosal defense against Giardia at the intestinal epithelial cell interface. Front Immunol. 2022;13:817468. https://doi.org/10.3389/fimmu.2022.817468.
Yoder JS, Gargano JW, Wallace RM, Beach MJ. Giardiasis surveillance-United States, 2009–2010. MMWR Surveill Summ. 2012;6:13–23.
Lane S, Lloyd D. Current trends in research into the waterborne parasite Giardia. Crit Rev Microbiol. 2002;28:123–47.
Thompson RC. Giardiasis as a re-emerging infectious disease and its zoonotic potential. Int J Parasitol. 2000;30:1259–67.
Hellard ME, Sinclair MI, Hogg GG, Fairley CK. Prevalence of enteric pathogens among community based asymptomatic individuals. J Gastroenterol Hepatol. 2000;15:290–3.
Kappus KD, Lundgren RG Jr, Juranek DD, Roberts JM, Spencer HC. Intestinal parasitism in the United States: update on a continuing problem. Am J Trop Med Hyg. 1994;50:705–13.
Scallan E, Hoekstra RM, Angulo FJ, Tauxe RV, Widdowson MA, Roy SL, et al. Foodborne illness acquired in the United States–major pathogens. Emerg Infect Dis. 2011;17:7–15.
Coffey CM, Collier SA, Gleason ME, Yoder JS, Kirk MD, Richardson AM, et al. Evolving epidemiology of reported giardiasis cases in the United States, 1995–2016. Clin Infect Dis. 2021;72:764–70.
Solaymani-Mohammadi S, Singer SM. Host immunity and pathogen strain contribute to intestinal disaccharidase impairment following gut infection. J Immunol. 2011;187:3769–75.
Babaei Z, Malihi N, Zia-Ali N, Sharifi I, Mohammadi MA, Kagnoff MF, et al. Adaptive immune response in symptomatic and asymptomatic enteric protozoal infection: evidence for a determining role of parasite genetic heterogeneity in host immunity to human giardiasis. Microbes Infect. 2016;18:687–95.
Nooshadokht M, Kalantari-Khandani B, Sharifi I, Kamyabi H, Liyanage NPM, Lagenaur LA, et al. Stool antigen immunodetection for diagnosis of Giardia duodenalis infection in human subjects with HIV and cancer. J Microbiol Methods. 2017;141:35–41.
Cacciò SM, Lalle M, Svärd SG. Host specificity in the Giardia duodenalis species complex. Infect Genet Evol. 2018;66:335–45.
Feng Y, Xiao L. Zoonotic potential and molecular epidemiology of Giardia species and giardiasis. Clin Microbiol Rev. 2011;24:110–40.
Cai W, Ryan U, Xiao L, Feng Y. Zoonotic giardiasis: an update. Parasitol Res. 2021;120:4199–218.
Woschke A, Faber M, Stark K, Holtfreter M, Mockenhaupt F, Richter J, et al. Suitability of current typing procedures to identify epidemiologically linked human Giardia duodenalis isolates. PLoS Negl Trop Dis. 2021;15:e0009277.
de Lucio A, Martínez-Ruiz R, Merino FJ, Bailo B, Aguilera M, Fuentes I, et al. Molecular genotyping of Giardia duodenalis isolates from symptomatic individuals attending two major public hospitals in Madrid. Spain PLoS One. 2015;10:e0143981.
Ahmad AA, El-Kady AM, Hassan TM. Genotyping of Giardia duodenalis in children in upper Egypt using assemblage-specific PCR technique. PLoS ONE. 2020;15:e0240119.
Minetti C, Lamden K, Durband C, Cheesbrough J, Fox A, Wastling JM. Determination of Giardia duodenalis assemblages and multi-locus genotypes in patients with sporadic giardiasis from England. Parasit Vectors. 2015;8:444.
Lecová L, Weisz F, Tůmová P, Tolarová V, Nohýnková E. The first multilocus genotype analysis of Giardia intestinalis in humans in the Czech Republic. Parasitology. 2018;145:1577–87.
Haque R, Roy S, Kabir M, Stroup SE, Mondal D, Houpt ER. Giardia assemblage A infection and diarrhea in Bangladesh. J Infect Dis. 2005;192:2171–3.
Gelanew T, Lalle M, Hailu A, Pozio E, Cacciò SM. Molecular characterization of human isolates of Giardia duodenalis from Ethiopia. Acta Trop. 2007;102:92–9.
Puebla LJ, Núñez FA, Fernández YA, Fraga J, Rivero LR, Millán IA, et al. Correlation of Giardia duodenalis assemblages with clinical and epidemiological data in Cuban children. Infect Genet Evol. 2014;23:7–12.
Pelayo L, Nuñez FA, Rojas L, Furuseth Hansen E, Gjerde B, Wilke H, et al. Giardia infections in Cuban children: the genotypes circulating in a rural population. Ann Trop Med Parasitol. 2008;102:585–95.
Messa A Jr, Köster PC, Garrine M, Gilchrist C, Bartelt LA, Nhampossa T, et al. Molecular diversity of Giardia duodenalis in children under 5 years from the Manhiça district, Southern Mozambique enrolled in a matched case-control study on the aetiology of diarrhoea. PLoS Negl Trop Dis. 2021;15:e0008987.
Sarzhanov F, Köster PC, Dogruman-Al F, Bailo B, Dashti A, Demirel-Kaya F, et al. Detection of enteric parasites and molecular characterization of Giardia duodenalis and Blastocystis sp in patients admitted to hospital in Ankara Turkey. Parasitology. 2021;148:550–61.
Köster PC, Malheiros AF, Shaw JJ, Balasegaram S, Prendergast A, Lucaccioni H, et al. Multilocus genotyping of Giardia duodenalis in mostly asymptomatic indigenous people from the Tapirapé Tribe. Brazilian Amazon Pathogens. 2021;10:206.
Chin AC, Teoh DA, Scott KG, Meddings JB, Macnaughton WK, Buret AG. Strain-dependent induction of enterocyte apoptosis by Giardia lamblia disrupts epithelial barrier function in a caspase-3-dependent manner. Infect Immun. 2002;70:3673–80.
Cevallos A, Carnaby S, James M, Farthing JG. Small intestinal injury in a neonatal rat model of giardiasis is strain dependent. Gastroenterology. 1995;109:766–73.
Solaymani-Mohammadi S, Singer SM. Regulation of intestinal epithelial cell cytoskeletal remodeling by cellular immunity following gut infection. Mucosal Immunol. 2013;6:369–78.
Scott KG, Logan MR, Klammer GM, Teoh DA, Buret AG. Jejunal brush border microvillous alterations in Giardia muris-infected mice: role of T lymphocytes and interleukin-6. Infect Immun. 2000;68:3412–8.
Scott KG, Yu LC, Buret AG. Role of CD8+ and CD4+ T lymphocytes in jejunal mucosal injury during murine giardiasis. Infect Immun. 2004;72:3536–42.
Keselman A, Li E, Maloney J, Singer SM. The microbiota contributes to CD8+ T cell activation and nutrient malabsorption following intestinal infection with Giardia duodenalis. Infect Immun. 2016;84:2853–60.
Singer SM, Nash TE. The role of normal flora in infections by Giardia lamblia. J Infect Dis. 2000;181:1510–2.
Torres MF, Uetanabaro APT, Costa AF, Alves CA, Farias LM, Bambirra EA, et al. Influence of bacteria from the duodenal microbiota of patients with symptomatic giardiasis on the pathogenicity of Giardia duodenalis in gnotoxenic mice. J Med Microbiol. 2000;49:209–15.
Iebba V, Santangelo F, Totino V, Pantanella F, Monsia A, Di Cristanziano V, et al. Gut microbiota related to Giardia duodenalis, Entamoeba spp. and Blastocystis hominis infections in humans from Côte d'Ivoire. J Infect Dev Ctries. 2016;10:1035–41.
Halliez MC, Motta JP, Feener TD, Guérin G, LeGoff L, François A, et al. Giardia duodenalis induces paracellular bacterial translocation and causes postinfectious visceral hypersensitivity. Am J Physiol Gastrointest Liver Physiol. 2016;310:G574–85.
Mejia R, Damania A, Jeun R, Bryan PE, Vargas P, Juarez M, et al. Impact of intestinal parasites on microbiota and cobalamin gene sequences: a pilot study. Parasit Vectors. 2020;13:200.
Berry ASF, Johnson K, Martins R, Sullivan MC, Farias Amorim C, Putre A, et al. Natural infection with Giardia is associated with altered community structure of the human and canine gut microbiome. mSphere. 2020;5:e00670-e720.
Pavanelli MF, Colli CM, Gomes ML, Góis MB, de Alcântara Nogueira de Melo G, de Almeida Araújo EJ, de Mello Gonçales Sant'Ana D. Comparative study of effects of assemblages AII and BIV of Giardia duodenalis on mucosa and microbiota of the small intestine in mice. 2018;101:563–571.
Yordanova IA, Cortés A, Klotz C, Kühl AA, Heimesaat MM, Cantacessi C, et al. RORγt+ Treg to Th17 ratios correlate with susceptibility to Giardia infection. Sci Rep. 2019;9:20328.
Chen TL, Chen S, Wu HW, Lee TC, Lu YZ, Wu LL, et al. Persistent gut barrier damage and commensal bacterial influx following eradication of Giardia infection in mice. Gut Pathog. 2013;5:26.
Shukla G, Bhatia R, Sharma A. Prebiotic inulin supplementation modulates the immune response and restores gut morphology in Giardia duodenalis-infected malnourished mice. Parasitol Res. 2016;115:4189–98.
Allain T, Chaouch S, Thomas M, Vallée I, Buret AG, Langella P, et al. Bile-salt-hydrolases from the probiotic strain Lactobacillus johnsonii La1 mediate anti-giardial activity in vitro and in vivo. Front Microbiol. 2018;8:2707.
Shukla G, Kamboj S, Sharma B. Comparative analysis of antigiardial potential of heat inactivated and probiotic protein of probiotic Lactobacillus rhamnosus GG in murine giardiasis. Probiotics Antimicrob Proteins. 2020;12:271–9.
Leitch GJ, Visvesvara GS, Wahlquist SP, Harmon CT. Dietary fiber and giardiasis: dietary fiber reduces rate of intestinal infection by Giardia lamblia in the gerbil. Am J Trop Med Hyg. 1989;41:512–20.
Allain T, Fekete E, Sosnowski O, Desmonts de Lamache D, Motta JP, et al. High-fat diet increases the severity of Giardia infection in association with low-grade inflammation and gut microbiota dysbiosis. Sci Rep. 2021;11:18842.
Hashemi-Hafshejani S, Meamar AR, Moradi M, Hemmati N, Solaymani-Mohammadi S, Razmjou E. Multilocus sequence typing of Giardia duodenalis genotypes circulating in humans in a major metropolitan area. Front Med. 2022;9:976956.
Sulaiman IM, Fayer R, Bern C, Gilman RH, Trout JM, Schantz PM, et al. Triosephosphate isomerase gene characterization and potential zoonotic transmission of Giardia duodenalis. Emerg Infect Dis. 2003;9:1444–52.
Geurden T, Levecke B, Cacciò SM, Visser A, De Groote G, Casaert S, et al. Multilocus genotyping of Cryptosporidium and Giardia in non-outbreak related cases of diarrhoea in human patients in Belgium. Parasitology. 2009;136:1161–8.
Huey CS, Mahdy MAK, Al-Mekhlafi HM, Nasr NA, Lim YAL, Mahmud R, et al. Multilocus genotyping of Giardia duodenalis in Malaysia. Infect Genet Evol. 2013;17:269–76.
Geurden T, Geldhof P, Levecke B, Martens C, Berkvens D, Casaert S, et al. Mixed Giardia duodenalis assemblage A and E infections in calves. Int J Parasitol. 2008;38:259–64.
Cacciò SM, De Giacomo M, Pozio E. Sequence analysis of the β-giardin gene and development of a polymerase chain reaction–restriction fragment length polymorphism assay to genotype Giardia duodenalis cysts from human faecal samples. Int J Parasitol. 2002;32:1023–30.
Lalle M, Pozio E, Capelli G, Bruschi F, Crotti D, Cacciò SM. Genetic heterogeneity at the beta-giardin locus among human and animal isolates of Giardia duodenalis and identification of potentially zoonotic subgenotypes. Int J Parasitol. 2005;35:207–13.
Barash NR, Maloney JG, Singer SM, Dawson SC. Giardia alters commensal microbial diversity throughout the murine gut. Infect Immun. 2017;85:e00948-e1016.
Beghini F, McIver LJ, Blanco-Míguez A, Dubois L, Asnicar F, Maharjan S, et al. Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery. Elife. 2021;10:e65088.
Kaur H, Seeger D, Golovko S, Golovko M, Combs CK. Liver Bile acid changes in mouse models of Alzheimer's Disease. Int J Mol Sci. 2021;22(14):7451.
Kaur H, Nagamoto-Combs K, Golovko S, Golovko MY, Klug MG, Combs CK. Probiotics ameliorate intestinal pathophysiology in a mouse model of Alzheimer's disease. Neurobiol Aging. 2020;92:114–34.
Read CM, Monis PT, Thompson RC. Discrimination of all genotypes of Giardia duodenalis at the glutamate dehydrogenase locus using PCR-RFLP. Infect Genet Evol. 2004;4:125–30.
Sahagún J, Clavel A, Goñi P, Seral C, Llorente MT, Castillo FJ, et al. Correlation between the presence of symptoms and the Giardia duodenalis genotype. Eur J Clin Microbiol Infect Dis. 2008;27:81–3.
Elhadad H, Abdo S, Tolba M, Salem AI, Mohamed MA, El-Abd EA, et al. Detection of Giardia intestinalis assemblages A and B among children from three villages in the West Delta region, Egypt using assemblage specific primers. J Parasit Dis. 2021;45:655–63.
Fahmy HM, El-Serougi AO, El Deeb HK, Hussein HM, Abou-Seri HM, Klotz C, et al. Giardia duodenalis assemblages in Egyptian children with diarrhea. Eur J Clin Microbiol Infect Dis. 2015;34:1573–81.
Tamer GS, Kasap M, Er DK. Genotyping and phylogenetic analysis of Giardia duodenalis isolates from Turkish children. Med Sci Monit. 2015;21:526–32.
Beatty JK, Akierman SV, Motta JP, Muise S, Workentine ML, Harrison JJ, et al. Giardia duodenalis induces pathogenic dysbiosis of human intestinal microbiota biofilms. Int J Parasitol. 2017;47:311–26.
Kamda JD, Singer SM. Phosphoinositide 3-kinase-dependent inhibition of dendritic cell interleukin-12 production by Giardia lamblia. Infect Immun. 2009;77:685–93.
Banik S, Renner Viveros P, Seeber F, Klotz C, Ignatius R, Aebischer T. Giardia duodenalis arginine deiminase modulates the phenotype and cytokine secretion of human dendritic cells by depletion of arginine and formation of ammonia. Infect Immun. 2013;81:2309–17.
Rodríguez-Walker M, Molina CR, Luján LA, Saura A, Jerlström-Hultqvist J, Svärd SG, et al. Comprehensive characterization of cysteine-rich protein-coding genes of Giardia lamblia and their role during antigenic variation. Genomics. 2022;114:110462.
Oberhuber G, Kastner N, Stolte M. Giardiasis: a histologic analysis of 567 cases. Scand J Gastroenterol. 1997;32:48–51.
Schofield PJ, Costello M, Edwards MR, O'Sullivan WJ. The arginine dihydrolase pathway is present in Giardia intestinalis. Int J Parasitol. 1990;20:697–9.
Eckmann L, Laurent F, Langford TD, Hetsko ML, Smith JR, Kagnoff MF, et al. Nitric oxide production by human intestinal epithelial cells and competition for arginine as potential determinants of host defense against the lumen-dwelling pathogen Giardia lamblia. J Immunol. 2000;164:1478–87.
Li E, Zhou P, Singer SM. Neuronal nitric oxide synthase is necessary for elimination of Giardia lamblia infections in mice. J Immunol. 2006;176:516–21.
Maloney J, Keselman A, Li E, Singer SM. Macrophages expressing arginase 1 and nitric oxide synthase 2 accumulate in the small intestine during Giardia lamblia infection. Microbes Infect. 2015;17:462–7.
Liu J, Ma'ayeh S, Peirasmaki D, Lundström-Stadelmann B, Hellman L, Svärd SG. Secreted Giardia intestinalis cysteine proteases disrupt intestinal epithelial cell junctional complexes and degrade chemokines. Virulence. 2018;9:879–94.
Ma'ayeh SY, Liu J, Peirasmaki D, Hörnaeus K, Bergström Lind S, Grabherr M, et al. Characterization of the Giardia intestinalis secretome during interaction with human intestinal epithelial cells: the impact on host cells. PLoS Negl Trop Dis. 2017;11:e0006120.
Campbell C, McKenney PT, Konstantinovsky D, Isaeva OI, Schizas M, Verter J, et al. Bacterial metabolism of bile acids promotes generation of peripheral regulatory T cells. Nature. 2020;581:475–9.
Hang S, Paik D, Yao L, Kim E, Trinath J, Lu J, et al. Bile acid metabolites control TH17 and Treg cell differentiation. Nature. 2019;576:143–8.
Rébeillé F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, et al. Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses. Proc Natl Acad Sci USA. 2006;103:15687–92.
Pan Y, Hu F, Yu C, Li C, Huang T, Hu H. Amino acid catabolism during nitrogen limitation in Phaeodactylum tricornutum. Front Plant Sci. 2020;11:589026.
Kocsis MG, Ranocha P, Gage DA, Simon ES, Rhodes D, Peel GJ, et al. Insertional inactivation of the methionine s-methyltransferase gene eliminates the s-methylmethionine cycle and increases the methylation ratio. Plant Physiol. 2003;131:1808–15.
Schalk-Hihi C, Markham GD. The conformations of a substrate and a product bound to the active site of S-adenosylmethionine synthetase. Biochemistry. 1999;38:2542–50.
Lu SC, Mato JM. S-adenosylmethionine in cell growth, apoptosis and liver cancer. J Gastroenterol Hepatol. 2008;1:S73–7.
Yerinde C, Siegmund B, Glauben R, Weidinger C. Metabolic control of epigenetics and its role in CD8+ T cell differentiation and function. Front Immunol. 2019;10:2718.
Sutter BM, Wu X, Laxman S, Tu BP. Methionine inhibits autophagy and promotes growth by inducing the SAM-responsive methylation of PP2A. Cell. 2013;154:403–15.
Comments
Post a Comment